##Publications and Conference Presentations

####Journal Papers

S. R. Summerson, B. Aazhang and C. Kemere. Investigating irregularly patterned deep brain stimulation signal design using biophysical models. Frontuers in Computational Neuroscience vol. 9, no. 78, June 26, 2015.

S. Summerson, B. Aazhang, C. Kemere (2014). Characterizing Motor and Cognitive Effects Associated with Deep Brain Stimulation in the GPi of Hemi-Parkinsonian Rats. IEEE Transactions on Neural Systems and Rehabilitation Egnineering, vol. 22, no. 6, pp. 1218-1227, November 2014.

C. Kemere, M. F. Carr, M. P. Karlsson, L. M. Frank (2013). Rapid and Continuous Modulation of Hippocampal Network State during Exploration of New Places. PloS one, 8(9), e73114. doi:10.1371/journal.pone.0073114

S. Summersonn, C. Kemere, Deep brain stimulation in the 6-OHDA rat, Journal of Visualized Experiments, invited/in preparation.

S. P. Jadhav, C. Kemere, P. W. German, and L. M. Frank, Awake hippocampal sharp-wave ripples support spatial memory.x, Science, vol. 336, no. 6087, pp. 1454–8, June 2012.

C. Kemere, G. Santhanam, B. M. Yu, A. Afshar, S. I. Ryu, T. H. Meng, and K. V. Shenoy, Detecting neural-state transitions using hidden Markov models for motor cortical prosthesesr., Journal of Neurophysiology, vol. 100, no. 4, pp. 2441–52, October 2008.

B. M. Yu, C. Kemere, G. Santhanam, A. Afshar, S. I. Ryu, T. H. Meng, M. Sahani, and K. V. Shenoy, Mixture of trajectory models for neural decoding of goal-directed movements. Journal of Neurophysiology, vol. 97, no. 5, pp. 3763–80, May 2007.

C. Kemere, K. V. Shenoy, and T. H. Meng,  Model-based neural decoding of reaching movements: a maximum likelihood approach. IEEE Transactions on Biomedical Engineering, vol. 51, no. 6, pp. 925–32, June 2004.

Z. S. Zumsteg, C. Kemere, S. O’Driscoll, G. Santhanam, R. E. Ahmed, K. V. Shenoy, and T. H. Meng, Power feasibility of implantable digital spike sorting circuits for neural prosthetic systems. IEEE Transactions on Neural Systems and Reabilitation Engineering, vol. 13, no. 3, pp. 272–9, September 2005.

####Conference Papers

S. Summerson, C. Kemere, B. Aazhang (2013). Current Amplitude-Dependent Modulation of Rotational Behavior with GPi Stimulation in the Rodent Model of Parkinson’s Disease. In Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE (pp. 783 – 786). doi:10.1109/EMBC.2013.6609617

Caleb Kemere, Byron Yu, Gopal Santhanam, Stephen Ryu, Afsheen Afshar, Teresa Meng, and Krishna Shenoy, Hidden Markov models for spatial and temporal estimation for prosthetic control. Society for Neuroscience Abstracts, Program #256.17, October 2006.

Stephen O’Driscoll, Teresa Meng, Krishna Shenoy, and Caleb Kemere, Neurons to Silicon: Implantable Prosthesis Processor. Proc. of the International Solid State Circuits Conference (ISSCC’06), session 30 (program number 30.1): 552-553 & 672, February 2006.

Caleb Kemere and Teresa Meng, Optimal estimation of feedforward-controlled linear systems. Proc. IEEE Intl. Conf. on Acoustics, Speech, and Signal Processing (ICASSP’05), vol. 5, pp. 353–356, March 2005.

Caleb Kemere, Gopal Santhanam, Byron Yu, Stephen Ryu, Teresa Meng, and Krishna Shenoy, Model-based decoding of reaching movements for prosthetic systems. Proc. of the 26th Annual Conference of the IEEE EMBS (EMBS’04), pp. 4524–4528, September 2004.

Caleb Kemere, Maneesh Sahani, and Teresa Meng, Robust neural decoding of reaching movements for prosthetic systems. Proc. IEEE Engineering in Medicine and Biology Society 25th Annual Conference (EMBS’03), pp. 2079–2082, September 2003.

Caleb Kemere, Gopal Santhanam, Byron Yu, Krishna Shenoy, and Teresa Meng, Decoding of plan and peri-movement neural signals in prosthetic systems. Proc. IEEE Workshop on Signal Processing Systems (SIPS’02), pp. 276–283, October 2002.

####Reviews and Book Chapters

D. M. Friend, C. Kemere and A. V. Kravitz. Quantifying Recording Quality in In Vivo Striatal Recordings. Current Protocols in Neuroscience, vol. 70, pp. 6–28, January 2015.

S. Summerson and C. Kemere. Multi-electrode Recording of Neural Activity in Awake Behaving Animals. In E. Covey & M. Carter (Eds.), Basic Electrophysiological Methods,pp. 76–107, Oxford Univ Press.

Krishna Shenoy et al., Increasing the performance of cortically-controlled prostheses. Proc. of the 28th Annual Conference of the IEEE EMBS (EMBS’08), pp. 6652–6655, August 2008.

Michael Linderman et al., Signal processing challenges for neural prostheses. IEEE Signal Processing Magazine, vol. 25, no. 1, pp. 18–28, January 2008.

####Conference Abstracts and Posters

Samantha Summerson, Behnaam Aazhang, Caleb Kemere, Motor behavior tuning as a function of stimulation frequency in the 6-ohda rat model of gpi-deep brain stimulation. Society for Neuroscience Abstracts, Program #622.03, November 2013.

Jakob Voigts, Joshua H. Siegle, Caleb Kemere, Christopher I. Moore, Matthew A. Wilson, A low-cost open-source system for combining high channel count electrophysiology with closed-loop optogenetic feedback. Society for Neuroscience Abstracts, Program #783.28, November 2013.

Flavia Vitale, Caleb Kemere, Matteo Pasquali, Carbon nanotube fibers microelectrodes for neural recording and stimulation. BMES Abstracts, Program #P-Fri-A-25, September 2013.

Samantha R Summerson, Behnaam Aazhang, Caleb Kemere, Behavioral effects of disrupted direct pathway signal flow caused by dopamine depletion. BMC Neuroscience 2013, 14(Suppl 1):P205, July 2013.

Jakob Voigts, Joshua H. Siegle, Caleb Kemere, Stuart Layton, Christopher I. Moore, Matthew A. Wilson, A low-cost open-source system for combining high channel count electrophysiology with closed-loop optogenetic feedbackSociety for Neuroscience Abstracts, Program #610.12, November 2012.

Shantanu P. Jadhav, Caleb Kemere, P. Walter German, and Loren Frank, Selective disruption of awake sharp-wave ripples impairs learning in a spatial working memory task. Society for Neuroscience Abstracts, Program #731.22, November 2011.

Margaret P. Carr, Caleb Kemere, Mattias P. Karlsson, Feng Zhang, Karl Deisseroth, and Loren Frank, Encoding to consolidation: Behavior and novelty regulate information flow through the hippocampal circuit. Society for Neuroscience Abstracts, Program #100.7, November 2010.

Caleb Kemere, Margaret P. Carr, Mattias P. Karlsson, Feng Zhang, Karl Deisseroth, and Loren Frank, Encoding to consolidation: An optogenetic probe reveals continuous modulation of hippocampal information processing by behavioral state. Society for Neuroscience Abstracts, Program #100.8, November 2010.

Caleb Kemere, Feng Zhang, Karl Deisseroth, and Loren Frank, Optogenetic control of hippocampal neurons in behaving rats using ChR2. Society for Neuroscience Abstracts, Program #690.6, November 2008.

Caleb Kemere, Gopal Santhanam, Stephen Ryu, Byron Yu, Teresa Meng, and Krishna Shenoy, Reconstruction of arm trajectories from plan and peri-movement motor cortical activity. Annual Neural Prosthesis Program Meeting, National Institutes of Health, November 2004.

Caleb Kemere, Gopal Santhanam, Stephen Ryu, Byron Yu, Teresa Meng, and Krishna Shenoy, Reconstruction of arm trajectories from plan and peri-movement motor cortical activity. Society for Neuroscience Abstracts, Program #884.12, October 2004.

####Patents

Caleb Kemere, Gopal Santhanam, Byron Yu, Teresa Meng, and Krishna Shenoy. Decoding of neural signals for movement control.  U. S. Patent No.7,058,445. June 2006.