Publications and Conference Presentations

Preprints

S. Dutta, E. Ackermann & C. Kemere. Analysis of an open source, closed-loop, realtime system for hippocampal sharp-wave ripple disruption. bioRxiv (2018). [DOI] [PDF]

Journal Papers

K. Maboudi, E. Ackermann, B. Pfei, D. Foster, K. Diba & C. Kemere. Uncovering temporal structure in hippocampal output patterns. eLife (2018). [DOI] [PDF]

C.-T. Wu, D. Haggerty, C. Kemere & D. Ji. Hippocampal awake replay in fear memory retrieval. Nat. Neurosci. 20, 571–580 (2017). [DOI][PDF]

F. Vitale, D. G. Vercosa, A. V. Rodriguez, S. S. Pamulapati, F. Seibt, E. Lewis, J. S. Yan, K. Badhiwala, M. Adnan, G. Royer-Carfagni, M. Beierlein, C. Kemere, M. Pasquali & J. T. Robinson. Fluidic Microactuation of Flexible Electrodes for Neural Recording. Nano Lett. acs.nanolett.7b04184 (2017). [DOI] [PDF]

A. K. Pediredla, S. Zhang, B. Avants, F. Ye, S. Nagayama, Z. Chen, C. Kemere, J. T. Robinson & A. Veeraraghavan. Deep imaging in scattering media with selective plane illumination microscopy. J. Biomed. Opt. 21, 126009 (2016). [DOI] [PDF]

S. R. Summerson, B. Aazhang & C. Kemere. Investigating irregularly patterned deep brain stimulation signal design using biophysical models. Front. Comput. Neurosci. 9, 78 (2015). [DOI] [PDF]

F. Vitale, S. R. Summerson, B. Aazhang, C. Kemere & M. Pasquali. Neural Stimulation and Recording with Bidirectional, Soft Carbon Nanotube Fiber Microelectrodes. ACS Nano 9, 4465–4474 (2015). [DOI] [PDF]

S. R. Summerson, B. Aazhang & C. T. Kemere. Characterizing motor and cognitive effects associated with deep brain stimulation in the GPI of hemi-parkinsonian rats. IEEE Trans. Neural Syst. Rehabil. Eng. 22, 1218–27 (2014). [DOI] [PDF]

C. Kemere, M. F. Carr, M. P. Karlsson & L. M. Frank. Rapid and continuous modulation of hippocampal network state during exploration of new places. PLoS One 8, e73114 (2013). [DOI] [PDF]

S. P. Jadhav, C. Kemere, P. W. German & L. M. Frank. Awake hippocampal sharp-wave ripples support spatial memory. Science 336, 1454–8 (2012). [DOI] [PDF]

C. Kemere, G. Santhanam, B. M. Yu, A. Afshar, S. I. Ryu, T. H. Meng & K. V Shenoy. Detecting neural-state transitions using hidden Markov models for motor cortical prostheses. J. Neurophysiol. 100, 2441–52 (2008). [DOI]

B. M. Yu, C. Kemere, G. Santhanam, A. Afshar, S. I. Ryu, T. H. Meng, M. Sahani & K. V Shenoy. Mixture of trajectory models for neural decoding of goal-directed movements. J. Neurophysiol. 97, 3763–80 (2007). [DOI]

Z. S. Zumsteg, C. Kemere, S. O’Driscoll, G. Santhanam, R. E. Ahmed, K. V Shenoy & T. H. Meng. Power feasibility of implantable digital spike sorting circuits for neural prosthetic systems. IEEE Trans. Neural Syst. Rehabil. Eng. 13, 272–9 (2005). [DOI]

C. Kemere, K. V Shenoy & T. H. Meng. Model-based neural decoding of reaching movements: a maximum likelihood approach. IEEE Trans. Biomed. Eng. 51, 925–32 (2004). [DOI]

Conference Papers

J. Juneau, G. Duret, J. T. Robinson & C. Kemere. Enhanced Image Sensor Module for Head-Mounted Microscopes. in Proc. 2018 IEEE Eng. Med. Biol. Conf. (2018). [PDF]

E. Ackermann, C. Kemere, K. Maboudi & K. Diba. Latent variable models for hippocampal sequence analysis. in 2017 51st Asilomar Conf. Signals, Syst. Comput. 724–728 (2017). [DOI] [PDF]

E. Ackermann & C. Kemere. Scoring sequences of hippocampal activity using hidden Markov models. in Eng. Med. Biol. Soc. (EMBC), 2016 IEEE 38th Annu. Int. Conf. EMBC 2016–Octob, 957–960 (2016). [DOI] [PDF]

A. Sethi & C. T. Kemere. Mulitchannel real time spike sorting for decoding ripple sequences. in 2015 7th Int. IEEE/EMBS Conf. Neural Eng. 956–959 (IEEE, 2015). [DOI] [PDF]

A. Sethi & C. Kemere. Real Time Algorithms for Sharp Wave Ripple Detection. Conf. Proc. Annu. Int. Conf. IEEE Eng. Med. Biol. Soc. IEEE Eng. Med. Biol. Soc. 2014, (2014). [DOI] [PDF]

S. R. Summerson, C. Grealish, B. Aazhang & C. T. Kemere. Randomized stimulation signal design to create partial informational lesions in parkinsonian neuronal networks. in Acoust. Speech Signal Process. (ICASSP), 2014 IEEE Int. Conf. 3626–3630 (2014). [DOI] [PDF]

S. Summerson, B. Aazhang & C. Kemere. Behavioral effects of disrupted direct pathway signal flow caused by dopamine depletion. BMC Neurosci. 14, P205 (2013). [DOI]

S. R. Summerson, C. T. Kemere & B. Aazhang. Current amplitude-dependent modulation of rotational behavior with GPi stimulation in the rodent model of Parkinson’s Disease. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2013, 783–6 (2013). [DOI] [PDF]

K. V Shenoy, G. Santhanam, S. I. Ryu, A. Afshar, B. M. Yu, V. Gilja, M. D. Linderman, R. S. Kalmar, J. P. Cunningham, C. T. Kemere, A. P. Batista, M. M. Churchland & T. H. Meng. Increasing the performance of cortically-controlled prostheses. in Eng. Med. Biol. Soc. 2006. EMBS ’06. 28th Annu. Int. Conf. IEEE Suppl, 6652–6 (2006). [DOI]

S. O’Driscoll, T. Meng, K. Shenoy & C. Kemere. Neurons to Silicon: Implantable Prosthesis Processor. in 2006 IEEE Int. Solid State Circuits Conf. - Dig. Tech. Pap. 2248–2257 (IEEE, 2006). [DOI]

C. Kemere & T. Meng. Optimal estimation of feed-foward-controlled linear systems. in Proceedings. (ICASSP ’05). IEEE Int. Conf. Acoust. Speech, Signal Process. 2005. 5, 353–356 (IEEE, 2005). [DOI]

C. Kemere, G. Santhanam, B. M. Yu, S. Ryu, T. Meng & K. V Shenoy. Model-based decoding of reaching movements for prosthetic systems. Eng. Med. Biol. Soc. 2004. IEMBS ’04. 26th Annu. Int. Conf. IEEE 6, 4524–8 (2004). [DOI]

Z. S. Zumsteg, R. E. Ahmed, G. Santhanam, K. V Shenoy & T. H. Meng. Power feasibility of implantable digital spike-sorting circuits for neural prosthetic systems. Eng. Med. Biol. Soc. 2004. IEMBS ’04. 26th Annu. Int. Conf. IEEE 6, 4237–40 (2004). [DOI]

C. Kemere, M. Sahani & T. Meng. Robust neural decoding of reaching movements for prosthetic systems. in Proc. 25th Annu. Int. Conf. IEEE Eng. Med. Biol. Soc. (IEEE Cat. No.03CH37439) 2079–2082 (IEEE, 2003). [DOI]

C. T. Kemere, G. Santhanam, B. M. Yu, K. V. Shenoy & T. H. Meng. Decoding of plan and peri-movement neural signals in prosthetic systems. in IEEE Work. Signal Process. Syst. 276–283 (IEEE, 2002). [DOI]

Reviews and Book Chapters

G. Pezzulo, C. Kemere & M. A. A. van der Meer. Internally generated hippocampal sequences as a vantage point to probe future-oriented forms of cognition. Ann. N. Y. Acad. Sci. 1396, 144–165 (2017). [DOI] [PDF]

D. M. Friend, C. Kemere & A. V Kravitz. Quantifying Recording Quality in In Vivo Striatal Recordings. Curr. Protoc. Neurosci. 70, 6–28 (2015). [DOI] [PDF]

S. Summerson & C. Kemere. in Basic Electrophysiol. Methods (Covey, E. & Carter, M.) 76–107 (Oxford Univ Press, 2015). [PDF]

M. Linderman, G. Santhanam, C. Kemere, V. Gilja, S. O’Driscoll, B. Yu, A. Afshar, S. Ryu, K. Shenoy & T. Meng. Signal Processing Challenges for Neural Prostheses. IEEE Signal Process. Mag. 25, 18–28 (2008). [DOI]

Conference Abstracts and Posters

Samantha Summerson, Behnaam Aazhang, Caleb Kemere, Motor behavior tuning as a function of stimulation frequency in the 6-ohda rat model of gpi-deep brain stimulation. Society for Neuroscience Abstracts, Program #622.03, November 2013.

Jakob Voigts, Joshua H. Siegle, Caleb Kemere, Christopher I. Moore, Matthew A. Wilson, A low-cost open-source system for combining high channel count electrophysiology with closed-loop optogenetic feedback. Society for Neuroscience Abstracts, Program #783.28, November 2013.

Flavia Vitale, Caleb Kemere, Matteo Pasquali, Carbon nanotube fibers microelectrodes for neural recording and stimulation. BMES Abstracts, Program #P-Fri-A-25, September 2013.

Samantha R Summerson, Behnaam Aazhang, Caleb Kemere, Behavioral effects of disrupted direct pathway signal flow caused by dopamine depletion. BMC Neuroscience 2013, 14(Suppl 1):P205, July 2013.

Jakob Voigts, Joshua H. Siegle, Caleb Kemere, Stuart Layton, Christopher I. Moore, Matthew A. Wilson, A low-cost open-source system for combining high channel count electrophysiology with closed-loop optogenetic feedbackSociety for Neuroscience Abstracts, Program #610.12, November 2012.

Shantanu P. Jadhav, Caleb Kemere, P. Walter German, and Loren Frank, Selective disruption of awake sharp-wave ripples impairs learning in a spatial working memory task. Society for Neuroscience Abstracts, Program #731.22, November 2011.

Margaret P. Carr, Caleb Kemere, Mattias P. Karlsson, Feng Zhang, Karl Deisseroth, and Loren Frank, Encoding to consolidation: Behavior and novelty regulate information flow through the hippocampal circuit. Society for Neuroscience Abstracts, Program #100.7, November 2010.

Caleb Kemere, Margaret P. Carr, Mattias P. Karlsson, Feng Zhang, Karl Deisseroth, and Loren Frank, Encoding to consolidation: An optogenetic probe reveals continuous modulation of hippocampal information processing by behavioral state. Society for Neuroscience Abstracts, Program #100.8, November 2010.

Caleb Kemere, Feng Zhang, Karl Deisseroth, and Loren Frank, Optogenetic control of hippocampal neurons in behaving rats using ChR2. Society for Neuroscience Abstracts, Program #690.6, November 2008.

Caleb Kemere, Gopal Santhanam, Stephen Ryu, Byron Yu, Teresa Meng, and Krishna Shenoy, Reconstruction of arm trajectories from plan and peri-movement motor cortical activity. Annual Neural Prosthesis Program Meeting, National Institutes of Health, November 2004.

Caleb Kemere, Gopal Santhanam, Stephen Ryu, Byron Yu, Teresa Meng, and Krishna Shenoy, Reconstruction of arm trajectories from plan and peri-movement motor cortical activity. Society for Neuroscience Abstracts, Program #884.12, October 2004.

Patents

Caleb Kemere, Gopal Santhanam, Byron Yu, Teresa Meng, and Krishna Shenoy. Decoding of neural signals for movement control.  U. S. Patent No.7,058,445. June 2006.